! Common cations parameters for CHARMM (optimized from free energy simulations) ! November 2002 ! Epsilon Rmin/2 ! (kcal/mol) Angstrom SOD 0.0 -0.0469 1.36375 ! sodium ! D. Beglovd and B. Roux, dA=-100.8 kcal/mol POT 0.0 -0.0870 1.76375 ! potassium ! D. Beglovd and B. Roux, dA=-82.36+2.8 = -79.56 kca/mol CLA 0.0 -0.150 2.27 ! chloride ! D. Beglovd and B. Roux, dA=-83.87+4.46 = -79.40 kcal/mol RUB 0.0000 -0.15 1.90 ! Rubidium ! delta A with respect to POT is +6.0 kcal/mol in bulk water CES 0.0000 -0.190 2.100 ! Cesium ! delta A with respect to POT is +12.0 kcal/mol MG 0.0 -0.0400 1.10000 CAL 0.000000 -0.120000 1.3670000 ! Calcium ! S. Marchand and B. Roux, dA = -384.8 kcal/mol CAD 0.000000 -0.120000 1.3570000 ! Cadmium ! S. Marchand and B. Roux MG 0.0 -0.0400 1.10000 NBFIX ! Emin Rmin ! (kcal/mol) (A) ! Free energy relative Interaction with ! to modified K+ isolated NMA SOD O -0.07502 3.245 ! adjusted to yield same -28.1 ! dA as SOD in liquid ! water (21 kcal/mol) ! Elec free energy Interaction with ! in liquid NMA isolated NMA POT O -0.1021763 3.69 ! adjusted to yield same -21.0 ! as POT in liquid ! water (-82.0 kcal/mol) ! Free energy relative ! to K+ in liquid NMA RUB O -0.1341641 3.82 ! +6.2